HL_7A01_066

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGCCGAAACGAUC

Length

13 nucleotides

Bulged bases

7A01|1|e2|C|1768

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|G|1760
7A01|1|e2|G|1761
7A01|1|e2|C|1762
7A01|1|e2|C|1763
7A01|1|e2|G|1764
7A01|1|e2|A|1765
7A01|1|e2|A|1766
7A01|1|e2|A|1767
7A01|1|e2|C|1768
7A01|1|e2|G|1769
7A01|1|e2|A|1770
7A01|1|e2|U|1771
7A01|1|e2|C|1772

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains