HL_7A01_071

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGUAACAAC

Length

10 nucleotides

Bulged bases

7A01|1|e2|A|2009

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|G|2004
7A01|1|e2|U|2005
7A01|1|e2|G|2006
7A01|1|e2|U|2007
7A01|1|e2|A|2008
7A01|1|e2|A|2009
7A01|1|e2|C|2010
7A01|1|e2|A|2011
7A01|1|e2|A|2012
7A01|1|e2|C|2013

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain K2

60S acidic ribosomal protein P0

Chain M2

Uncharacterized protein