HL_7A01_072
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAGUCGAGAGUGGACGGGAGCGGCGGGGGCGGCGCGCGCGCGCGCCCGCCCCCGGAGCCCCGCGGACGCUACG
- Length
- 73 nucleotides
- Bulged bases
- 7A01|1|e2|U|2089, 7A01|1|e2|C|2090, 7A01|1|e2|G|2091, 7A01|1|e2|A|2092, 7A01|1|e2|A|2094, 7A01|1|e2|G|2095, 7A01|1|e2|G|2105, 7A01|1|e2|C|2106, 7A01|1|e2|G|2107, 7A01|1|e2|G|2110, 7A01|1|e2|G|2113, 7A01|1|e2|C|2115, 7A01|1|e2|C|2122, 7A01|1|e2|G|2125, 7A01|1|e2|G|2245, 7A01|1|e2|C|2247, 7A01|1|e2|C|2249, 7A01|1|e2|G|2251, 7A01|1|e2|C|2256, 7A01|1|e2|C|2257, 7A01|1|e2|G|2259, 7A01|1|e2|A|2263, 7A01|1|e2|U|2267, 7A01|1|e2|C|2269
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7A01|1|e2|C|2086
7A01|1|e2|A|2087
7A01|1|e2|G|2088
7A01|1|e2|U|2089
7A01|1|e2|C|2090
7A01|1|e2|G|2091
7A01|1|e2|A|2092
7A01|1|e2|G|2093
7A01|1|e2|A|2094
7A01|1|e2|G|2095
7A01|1|e2|U|2096
7A01|1|e2|G|2097
7A01|1|e2|G|2098
7A01|1|e2|A|2099
7A01|1|e2|C|2100
7A01|1|e2|G|2101
7A01|1|e2|G|2102
7A01|1|e2|G|2103
7A01|1|e2|A|2104
7A01|1|e2|G|2105
7A01|1|e2|C|2106
7A01|1|e2|G|2107
7A01|1|e2|G|2108
7A01|1|e2|C|2109
7A01|1|e2|G|2110
7A01|1|e2|G|2111
7A01|1|e2|G|2112
7A01|1|e2|G|2113
7A01|1|e2|G|2114
7A01|1|e2|C|2115
7A01|1|e2|G|2116
7A01|1|e2|G|2117
7A01|1|e2|C|2118
7A01|1|e2|G|2119
7A01|1|e2|C|2120
7A01|1|e2|G|2121
7A01|1|e2|C|2122
7A01|1|e2|G|2123
7A01|1|e2|C|2124
7A01|1|e2|G|2125
7A01|1|e2|C|2126
7A01|1|e2|G|2127
7A01|1|e2|C|2128
7A01|1|e2|G|2129
7A01|1|e2|C|2130
7A01|1|e2|C|2243
7A01|1|e2|C|2244
7A01|1|e2|G|2245
7A01|1|e2|C|2246
7A01|1|e2|C|2247
7A01|1|e2|C|2248
7A01|1|e2|C|2249
7A01|1|e2|C|2250
7A01|1|e2|G|2251
7A01|1|e2|G|2252
7A01|1|e2|A|2253
7A01|1|e2|G|2254
7A01|1|e2|C|2255
7A01|1|e2|C|2256
7A01|1|e2|C|2257
7A01|1|e2|C|2258
7A01|1|e2|G|2259
7A01|1|e2|C|2260
7A01|1|e2|G|2261
7A01|1|e2|G|2262
7A01|1|e2|A|2263
7A01|1|e2|C|2264
7A01|1|e2|G|2265
7A01|1|e2|C|2266
7A01|1|e2|U|2267
7A01|1|e2|A|2268
7A01|1|e2|C|2269
7A01|1|e2|G|2270
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain J2
- Uncharacterized protein
- Chain R2
- Ribosomal_L6e_N domain-containing protein
- Chain S2
- 60S RIBOSOMAL PROTEIN EL18
- Chain T2
- 60S ribosomal protein L6
- Chain U2
- uL30
- Chain t2
- uL4
- Chain v2
- eL32
Coloring options: