HL_7A01_078

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

7A01|1|e2|U|2530, 7A01|1|e2|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_078 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.215

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7A01|1|e2|G|2523
7A01|1|e2|U|2524
7A01|1|e2|U|2525
7A01|1|e2|C|2526
7A01|1|e2|A|2527
7A01|1|e2|G|2528
7A01|1|e2|A|2529
7A01|1|e2|U|2530
7A01|1|e2|C|2531
7A01|1|e2|C|2532

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 32

60S RIBOSOMAL PROTEIN EL19

Chain m2

Uncharacterized protein

Chain y2

eL34