HL_7A01_087

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7A01|1|e2|U|2874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_087 not in the Motif Atlas

Homologous match to HL_5TBW_043

Geometric discrepancy: 0.2337

The information below is about HL_5TBW_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7A01|1|e2|C|2872
7A01|1|e2|U|2873
7A01|1|e2|U|2874
7A01|1|e2|C|2875
7A01|1|e2|G|2876
7A01|1|e2|G|2877

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain I2

ribosomal protein eL43

Chain K3

Small subunit ribosomal RNA; SSU rRNA

Chain X3

60s ribosomal protein l41