HL_7A01_093

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

7A01|1|e2|C|3761

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|G|3757
7A01|1|e2|U|3758
7A01|1|e2|A|3759
7A01|1|e2|A|3760
7A01|1|e2|C|3761
7A01|1|e2|U|3762
7A01|1|e2|A|3763
7A01|1|e2|U|3764
7A01|1|e2|G|3765
7A01|1|e2|A|3766
7A01|1|e2|C|3767

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain K3

Small subunit ribosomal RNA; SSU rRNA