HL_7A01_095

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7A01|1|e2|A|3876, 7A01|1|e2|A|3877, 7A01|1|e2|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_095 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.1167

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7A01|1|e2|G|3873
7A01|1|e2|G|3874
7A01|1|e2|G|3875
7A01|1|e2|A|3876
7A01|1|e2|A|3877
7A01|1|e2|C|3878
7A01|1|e2|G|3879
7A01|1|e2|G|3880
7A01|1|e2|G|3881
7A01|1|e2|C|3882

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain v2

eL32