HL_7A01_099

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7A01|1|e2|G|4195, 7A01|1|e2|G|4198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_099 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3975

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7A01|1|e2|C|4193
7A01|1|e2|U|4194
7A01|1|e2|G|4195
7A01|1|e2|G|4196
7A01|1|e2|G|4197
7A01|1|e2|G|4198
7A01|1|e2|C|4199
7A01|1|e2|G|4200
7A01|1|e2|G|4201

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain X2

Ribosomal protein L10 (Predicted)

Chain r2

60S ribosomal protein L29