HL_7A01_112

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7A01|1|e2|G|4694, 7A01|1|e2|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_112 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.126

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7A01|1|e2|C|4688
7A01|1|e2|U|4689
7A01|1|e2|G|4690
7A01|1|e2|A|4691
7A01|1|e2|A|4692
7A01|1|e2|C|4693
7A01|1|e2|G|4694
7A01|1|e2|C|4695
7A01|1|e2|C|4696
7A01|1|e2|U|4697
7A01|1|e2|C|4698
7A01|1|e2|U|4699
7A01|1|e2|A|4700
7A01|1|e2|A|4701
7A01|1|e2|G|4702

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain E2

60S RIBOSOMAL PROTEIN EL40

Chain W2

Uncharacterized protein

Chain w2

60S RIBOSOMAL PROTEIN UL13