HL_7A01_115

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

7A01|1|e2|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_115 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.3736

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

7A01|1|e2|G|4975
7A01|1|e2|U|4976
7A01|1|e2|A|4977
7A01|1|e2|G|4978
7A01|1|e2|A|4979
7A01|1|e2|C|4980
7A01|1|e2|G|4981
7A01|1|e2|A|4982
7A01|1|e2|C|4983

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain H2

uL22