HL_7A01_131

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGUUCCGG

Length

9 nucleotides

Bulged bases

7A01|1|e2|U|2707, 7A01|1|e2|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|C|2704
7A01|1|e2|G|2705
7A01|1|e2|G|2706
7A01|1|e2|U|2707
7A01|1|e2|U|2708
7A01|1|e2|C|2709
7A01|1|e2|C|2710
7A01|1|e2|G|2711
7A01|1|e2|G|2712

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 32

60S RIBOSOMAL PROTEIN EL19

Chain 82

Ribosomal protein L22

Chain m2

Uncharacterized protein