HL_7A01_137

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUCUAAUUAGU

Length

11 nucleotides

Bulged bases

7A01|1|e2|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|A|3795
7A01|1|e2|U|3796
7A01|1|e2|C|3797
7A01|1|e2|U|3798
7A01|1|e2|A|3799
7A01|1|e2|A|3800
7A01|1|e2|U|3801
7A01|1|e2|U|3802
7A01|1|e2|A|3803
7A01|1|e2|G|3804
7A01|1|e2|U|3805

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain K3

Small subunit ribosomal RNA; SSU rRNA

Chain k2

eL14