HL_7A09_006

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCCGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A09_006 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.1377

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

7A09|1|2|G|320
7A09|1|2|C|321
7A09|1|2|C|322
7A09|1|2|G|330
7A09|1|2|C|331

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain r

40S ribosomal protein S6