HL_7A09_016

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

7A09|1|2|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A09_016 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.1666

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7A09|1|2|U|820
7A09|1|2|G|821
7A09|1|2|U|822
7A09|1|2|U|823
7A09|1|2|C|824
7A09|1|2|A|825
7A09|1|2|A|826
7A09|1|2|A|827
7A09|1|2|G|828

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain c

40S ribosomal protein S9

Chain q

40S ribosomal protein S4, X isoform

Chain z

40S ribosomal protein S24