HL_7A09_038
3D structure
- PDB id
- 7A09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human ABCE1-bound 43S pre-initiation complex - State III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAUCGAAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7A09_038 not in the Motif Atlas
- Homologous match to HL_1QU2_003
- Geometric discrepancy: 0.2216
- The information below is about HL_1QU2_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
7A09|1|f|G|53
7A09|1|f|A|54
7A09|1|f|U|55
7A09|1|f|C|56
7A09|1|f|G|57
7A09|1|f|A|58
7A09|1|f|A|59
7A09|1|f|A|60
7A09|1|f|C|61
Current chains
- Chain f
- tRNA
Nearby chains
- Chain O
- Eukaryotic translation initiation factor 2 subunit 1
Coloring options: