HL_7A09_039

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCCGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A09_039 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2972

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

7A09|1|2|G|832
7A09|1|2|C|833
7A09|1|2|C|834
7A09|1|2|G|841
7A09|1|2|C|842

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain q

40S ribosomal protein S4, X isoform

Chain z

40S ribosomal protein S24