HL_7A0S_033

3D structure

PDB id

7A0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Deinococcus radiodurans ribosome bounded with mycinamicin I

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

7A0S|1|X|G|1338, 7A0S|1|X|U|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7A0S|1|X|G|1337
7A0S|1|X|G|1338
7A0S|1|X|U|1339
7A0S|1|X|C|1340
7A0S|1|X|G|1341
7A0S|1|X|U|1342
7A0S|1|X|C|1343

Current chains

Chain X

RNA (2732-MER)

Nearby chains

Chain K

50S ribosomal protein L17

Chain P

50S ribosomal protein L22