HL_7A0S_055

3D structure

PDB id

7A0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Deinococcus radiodurans ribosome bounded with mycinamicin I

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

CGCAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

7A0S|1|X|C|2303
7A0S|1|X|G|2304
7A0S|1|X|C|2305
7A0S|1|X|A|2306
7A0S|1|X|A|2307
7A0S|1|X|A|2308
7A0S|1|X|G|2309
7A0S|1|X|G|2310

Current chains

Chain X

RNA (2732-MER)

Nearby chains

Chain D

50S ribosomal protein L5

Chain J

50S ribosomal protein L16

Chain T

50S ribosomal protein L27