HL_7A1G_016

3D structure

PDB id

7A1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGGCCGGUCGGAUUUCCA

Length

18 nucleotides

Bulged bases

7A1G|1|2|G|655, 7A1G|1|2|C|658, 7A1G|1|2|G|676

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A1G|1|2|U|650
7A1G|1|2|G|651
7A1G|1|2|G|652
7A1G|1|2|C|653
7A1G|1|2|C|654
7A1G|1|2|G|655
7A1G|1|2|G|656
7A1G|1|2|U|657
7A1G|1|2|C|658
7A1G|1|2|G|676
7A1G|1|2|G|677
7A1G|1|2|A|678
7A1G|1|2|U|679
7A1G|1|2|U|680
7A1G|1|2|U|681
7A1G|1|2|C|682
7A1G|1|2|C|683
7A1G|1|2|A|684

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

40S ribosomal protein S9-A