HL_7A1G_038

3D structure

PDB id

7A1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

7A1G|1|2|G|834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A1G_038 not in the Motif Atlas

Homologous match to HL_8P9A_236

Geometric discrepancy: 0.4106

The information below is about HL_8P9A_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88364.2

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7A1G|1|2|A|829
7A1G|1|2|U|830
7A1G|1|2|U|831
7A1G|1|2|U|832
7A1G|1|2|U|833
7A1G|1|2|G|834
7A1G|1|2|U|835
7A1G|1|2|U|836
7A1G|1|2|G|837
7A1G|1|2|G|838
7A1G|1|2|U|839
7A1G|1|2|U|840
7A1G|1|2|U|841
7A1G|1|2|C|842
7A1G|1|2|U|843

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S6-A

Chain X

40S ribosomal protein S11-A