HL_7A5P_001

3D structure

PDB id

7A5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human C Complex Spliceosome - Medium-resolution PERIPHERY

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

AGUAGGAGCUUGCUCCG*U

Length

18 nucleotides

Bulged bases

7A5P|1|2|A|123, 7A5P|1|2|G|124, 7A5P|1|2|G|125, 7A5P|1|2|A|126, 7A5P|1|2|G|127, 7A5P|1|2|C|128, 7A5P|1|2|U|129, 7A5P|1|2|U|130, 7A5P|1|2|G|131, 7A5P|1|2|C|132, 7A5P|1|2|U|133, 7A5P|1|2|C|134, 7A5P|1|2|C|135

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A5P|1|2|A|120
7A5P|1|2|G|136
7A5P|1|2|U|137
7A5P|1|2|A|123
7A5P|1|2|G|124
7A5P|1|2|G|125
7A5P|1|2|A|126
7A5P|1|2|G|127
7A5P|1|2|C|128
7A5P|1|2|U|129
7A5P|1|2|U|130
7A5P|1|2|G|131
7A5P|1|2|C|132
7A5P|1|2|U|133
7A5P|1|2|C|134
7A5P|1|2|C|135
7A5P|1|2|G|136
*
7A5P|1|2|U|137

Current chains

Chain 2

U2 snRNA

Nearby chains