HL_7ABI_007

3D structure

PDB id

7ABI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-Bact-2 spliceosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8 Å

Loop

Sequence

UGCGCAA

Length

7 nucleotides

Bulged bases

7ABI|1|6|C|68

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ABI_007 not in the Motif Atlas

Geometric match to HL_5J7L_025

Geometric discrepancy: 0.2557

The information below is about HL_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

7ABI|1|6|U|64
7ABI|1|6|G|65
7ABI|1|6|C|66
7ABI|1|6|G|67
7ABI|1|6|C|68
7ABI|1|6|A|69
7ABI|1|6|A|70

Current chains

Chain 6

U6 snRNA

Nearby chains

Chain 5

U5 spliceosomal RNA; U5 snRNA

Chain A

Pre-mRNA-processing-splicing factor 8

Chain G

Pleiotropic regulator 1