HL_7AC7_111

3D structure

PDB id

7AC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of accomodated trans-translation complex on E. Coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GA(PSU)UGAA(MIA)A(PSU)C

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, MIA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AC7_111 not in the Motif Atlas

Homologous match to HL_1B23_002

Geometric discrepancy: 0.3344

The information below is about HL_1B23_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AC7|1|7|G|30
7AC7|1|7|A|31
7AC7|1|7|PSU|32
7AC7|1|7|U|33
7AC7|1|7|G|34
7AC7|1|7|A|35
7AC7|1|7|A|36
7AC7|1|7|MIA|37
7AC7|1|7|A|38
7AC7|1|7|PSU|39
7AC7|1|7|C|40

Current chains

Chain 7

tRNA-Phe

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain 8

mRNA

Chain n

30S ribosomal protein S9