HL_7AF3_006

3D structure

PDB id

7AF3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state M (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

7AF3|1|1|C|1136, 7AF3|1|1|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AF3_006 not in the Motif Atlas

Homologous match to HL_5J7L_025

Geometric discrepancy: 0.2178

The information below is about HL_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

7AF3|1|1|G|1134
7AF3|1|1|U|1135
7AF3|1|1|C|1136
7AF3|1|1|C|1137
7AF3|1|1|G|1138
7AF3|1|1|G|1139
7AF3|1|1|C|1140

Current chains

Chain 1

16S rRNA (head)

Nearby chains

Chain I

30S ribosomal protein S9