HL_7AF5_007

3D structure

PDB id

7AF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state I (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

7AF5|1|1|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AF5_007 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.2317

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7AF5|1|1|U|1165
7AF5|1|1|G|1166
7AF5|1|1|A|1167
7AF5|1|1|U|1168
7AF5|1|1|A|1169
7AF5|1|1|A|1170
7AF5|1|1|A|1171

Current chains

Chain 1

16SrRNA (head domain of the 30S ribosome)

Nearby chains

Chain B

30S ribosomal protein S2