HL_7AF5_011

3D structure

PDB id

7AF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state I (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

7AF5|1|1|C|1136, 7AF5|1|1|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AF5_011 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.2474

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

7AF5|1|1|G|1134
7AF5|1|1|U|1135
7AF5|1|1|C|1136
7AF5|1|1|C|1137
7AF5|1|1|G|1138
7AF5|1|1|G|1139
7AF5|1|1|C|1140

Current chains

Chain 1

16SrRNA (head domain of the 30S ribosome)

Nearby chains

Chain I

30S ribosomal protein S9