HL_7AFA_006

3D structure

PDB id

7AFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state F (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

7AFA|1|1|C|1136, 7AFA|1|1|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AFA_006 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.3474

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

7AFA|1|1|G|1134
7AFA|1|1|U|1135
7AFA|1|1|C|1136
7AFA|1|1|C|1137
7AFA|1|1|G|1138
7AFA|1|1|G|1139
7AFA|1|1|C|1140

Current chains

Chain 1

16SrRNA (head domain of the 30S ribosome)

Nearby chains

Chain I

30S ribosomal protein S9