HL_7AFL_017

3D structure

PDB id

7AFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (multibody refinement for body domain of 30S ribosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

7AFL|1|A|A|790, 7AFL|1|A|G|791, 7AFL|1|A|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AFL_017 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.0942

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7AFL|1|A|G|786
7AFL|1|A|A|787
7AFL|1|A|U|788
7AFL|1|A|U|789
7AFL|1|A|A|790
7AFL|1|A|G|791
7AFL|1|A|A|792
7AFL|1|A|U|793
7AFL|1|A|A|794
7AFL|1|A|C|795
7AFL|1|A|C|796

Current chains

Chain A

16SrRNA

Nearby chains

Chain K

30S ribosomal protein S11

Chain V

Ribosome-binding factor A