HL_7AFO_011

3D structure

PDB id

7AFO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state B (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7AFO|1|A|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AFO_011 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.2328

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7AFO|1|A|C|419
7AFO|1|A|U|420
7AFO|1|A|U|421
7AFO|1|A|C|422
7AFO|1|A|G|423
7AFO|1|A|G|424

Current chains

Chain A

16SrRNA (body domain of the 30S ribosome)

Nearby chains

Chain D

30S ribosomal protein S4