HL_7AFO_012

3D structure

PDB id

7AFO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state B (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

7AFO|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AFO_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2324

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7AFO|1|A|G|462
7AFO|1|A|U|463
7AFO|1|A|U|464
7AFO|1|A|A|465
7AFO|1|A|A|466
7AFO|1|A|U|467
7AFO|1|A|A|468
7AFO|1|A|C|469
7AFO|1|A|C|470

Current chains

Chain A

16SrRNA (body domain of the 30S ribosome)

Nearby chains