HL_7AS8_001

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGGGGAG

Length

8 nucleotides

Bulged bases

7AS8|1|2|G|18, 7AS8|1|2|A|21

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AS8_001 not in the Motif Atlas

Homologous match to HL_4YCO_001

Geometric discrepancy: 0.4346

The information below is about HL_4YCO_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_66853.7

Basepair signature

cWW-cWS-F-cSH

Number of instances in this motif group

11

Unit IDs

7AS8|1|2|C|13
7AS8|1|2|A|14
7AS8|1|2|G|15
7AS8|1|2|G|18
7AS8|1|2|G|19
7AS8|1|2|G|20
7AS8|1|2|A|21
7AS8|1|2|G|22

Current chains

Chain 2

tRNA-Ala-1-1

Nearby chains

Chain 0

Rqc2 homolog RqcH

Chain 1

Uncharacterized protein YabO

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain H

50S ribosomal protein L5