HL_7AS8_002

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUUGCACG

Length

9 nucleotides

Bulged bases

7AS8|1|2|A|37

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AS8_002 not in the Motif Atlas

Homologous match to HL_1H4S_002

Geometric discrepancy: 0.5202

The information below is about HL_1H4S_002

Detailed Annotation

tRNA anticodon loop with synthetase

Broad Annotation

tRNA anticodon loop with synthetase

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

7AS8|1|2|C|31
7AS8|1|2|U|32
7AS8|1|2|U|33
7AS8|1|2|U|34
7AS8|1|2|G|35
7AS8|1|2|C|36
7AS8|1|2|A|37
7AS8|1|2|C|38
7AS8|1|2|G|39

Current chains

Chain 2

tRNA-Ala-1-1

Nearby chains

Chain 0

Rqc2 homolog RqcH

Chain 1

Uncharacterized protein YabO