HL_7AS8_013

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

7AS8|1|A|A|355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AS8_013 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1353

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

7AS8|1|A|C|349
7AS8|1|A|U|350
7AS8|1|A|G|351
7AS8|1|A|G|352
7AS8|1|A|A|353
7AS8|1|A|A|354
7AS8|1|A|A|355
7AS8|1|A|G|356

Current chains

Chain A

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L24