HL_7AS8_018

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AS8_018 not in the Motif Atlas

Homologous match to HL_4WF9_015

Geometric discrepancy: 0.084

The information below is about HL_4WF9_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7AS8|1|A|C|509
7AS8|1|A|G|510
7AS8|1|A|U|511
7AS8|1|A|G|512
7AS8|1|A|A|513
7AS8|1|A|G|514

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L4

Chain h

50S ribosomal protein L34