HL_7AS8_033

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AS8_033 not in the Motif Atlas

Homologous match to HL_4WF9_031

Geometric discrepancy: 0.1296

The information below is about HL_4WF9_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

7AS8|1|A|C|1262
7AS8|1|A|G|1263
7AS8|1|A|G|1264
7AS8|1|A|A|1265
7AS8|1|A|A|1266
7AS8|1|A|G|1267

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L15

Chain U

50S ribosomal protein L20

Chain V

50S ribosomal protein L21