HL_7AS8_035

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

7AS8|1|A|C|1364, 7AS8|1|A|U|1368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AS8_035 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.1031

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7AS8|1|A|G|1363
7AS8|1|A|C|1364
7AS8|1|A|U|1365
7AS8|1|A|C|1366
7AS8|1|A|G|1367
7AS8|1|A|U|1368
7AS8|1|A|C|1369

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L17

Chain W

50S ribosomal protein L22