3D structure

PDB id
7AS8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GUAUUGGAUAUC
Length
12 nucleotides
Bulged bases
7AS8|1|A|U|1500, 7AS8|1|A|U|1501, 7AS8|1|A|A|1506, 7AS8|1|A|U|1507
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7AS8_038 not in the Motif Atlas
Geometric match to HL_1WZ2_007
Geometric discrepancy: 0.1315
The information below is about HL_1WZ2_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

7AS8|1|A|G|1497
7AS8|1|A|U|1498
7AS8|1|A|A|1499
7AS8|1|A|U|1500
7AS8|1|A|U|1501
7AS8|1|A|G|1502
7AS8|1|A|G|1503
7AS8|1|A|A|1504
7AS8|1|A|U|1505
7AS8|1|A|A|1506
7AS8|1|A|U|1507
7AS8|1|A|C|1508

Current chains

Chain A
23S rRNA

Nearby chains

Chain R
50S ribosomal protein L17

Coloring options:


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