HL_7AS8_061

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGUCCACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AS8_061 not in the Motif Atlas

Homologous match to HL_7RQB_060

Geometric discrepancy: 0.1672

The information below is about HL_7RQB_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

7AS8|1|A|A|2500
7AS8|1|A|G|2501
7AS8|1|A|U|2502
7AS8|1|A|C|2503
7AS8|1|A|C|2504
7AS8|1|A|A|2505
7AS8|1|A|C|2506
7AS8|1|A|A|2507
7AS8|1|A|U|2508

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Rqc2 homolog RqcH

Chain I

50S ribosomal protein L6

Chain j

50S ribosomal protein L36