HL_7ASM_017

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGUUAAUG

Length

8 nucleotides

Bulged bases

7ASM|1|A|U|590, 7ASM|1|A|U|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASM_017 not in the Motif Atlas

Homologous match to HL_4WF9_017

Geometric discrepancy: 0.1054

The information below is about HL_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50318.1

Basepair signature

cWW-cSH-F-F

Number of instances in this motif group

1

Unit IDs

7ASM|1|A|C|587
7ASM|1|A|G|588
7ASM|1|A|U|589
7ASM|1|A|U|590
7ASM|1|A|A|591
7ASM|1|A|A|592
7ASM|1|A|U|593
7ASM|1|A|G|594

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L13

Chain O

50S ribosomal protein L20

Chain P

50S ribosomal protein L21