HL_7ASM_019

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

AGUAAAU

Length

7 nucleotides

Bulged bases

7ASM|1|A|A|658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASM_019 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.1758

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7ASM|1|A|A|655
7ASM|1|A|G|656
7ASM|1|A|U|657
7ASM|1|A|A|658
7ASM|1|A|A|659
7ASM|1|A|A|660
7ASM|1|A|U|661

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4