HL_7ASM_031

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASM_031 not in the Motif Atlas

Homologous match to HL_4WF9_031

Geometric discrepancy: 0.0866

The information below is about HL_4WF9_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

7ASM|1|A|C|1260
7ASM|1|A|G|1261
7ASM|1|A|U|1262
7ASM|1|A|A|1263
7ASM|1|A|A|1264
7ASM|1|A|G|1265

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L15

Chain O

50S ribosomal protein L20

Chain P

50S ribosomal protein L21