HL_7ASM_048

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

7ASM|1|A|A|2057, 7ASM|1|A|A|2058, 7ASM|1|A|G|2059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASM_048 not in the Motif Atlas

Geometric match to HL_4WF9_047

Geometric discrepancy: 0.0904

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

7ASM|1|A|G|2054
7ASM|1|A|U|2055
7ASM|1|A|G|2056
7ASM|1|A|A|2057
7ASM|1|A|A|2058
7ASM|1|A|G|2059
7ASM|1|A|A|2060
7ASM|1|A|U|2061
7ASM|1|A|G|2062
7ASM|1|A|C|2063

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain P

50S ribosomal protein L21

Chain Z

50S ribosomal protein L32