HL_7ASM_051

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7ASM|1|A|G|2277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASM_051 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.0894

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

7ASM|1|A|C|2275
7ASM|1|A|U|2276
7ASM|1|A|G|2277
7ASM|1|A|G|2278
7ASM|1|A|G|2279
7ASM|1|A|G|2280
7ASM|1|A|C|2281
7ASM|1|A|G|2282
7ASM|1|A|G|2283

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27