HL_7ASM_052

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

7ASM|1|A|A|2295, 7ASM|1|A|C|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASM_052 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.0734

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7ASM|1|A|C|2291
7ASM|1|A|U|2292
7ASM|1|A|A|2293
7ASM|1|A|A|2294
7ASM|1|A|A|2295
7ASM|1|A|A|2296
7ASM|1|A|G|2297
7ASM|1|A|G|2298
7ASM|1|A|U|2299
7ASM|1|A|A|2300
7ASM|1|A|A|2301
7ASM|1|A|C|2302
7ASM|1|A|G|2303

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27