HL_7ASM_053

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GGUUGGAAAUC

Length

11 nucleotides

Bulged bases

7ASM|1|A|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASM_053 not in the Motif Atlas

Homologous match to HL_4WF9_051

Geometric discrepancy: 0.4017

The information below is about HL_4WF9_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ASM|1|A|G|2330
7ASM|1|A|G|2331
7ASM|1|A|U|2332
7ASM|1|A|U|2333
7ASM|1|A|G|2334
7ASM|1|A|G|2335
7ASM|1|A|A|2336
7ASM|1|A|A|2337
7ASM|1|A|A|2338
7ASM|1|A|U|2339
7ASM|1|A|C|2340

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L5