HL_7ASM_054

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UGUAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASM_054 not in the Motif Atlas

Homologous match to HL_4WF9_052

Geometric discrepancy: 0.1475

The information below is about HL_4WF9_052

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

7ASM|1|A|U|2351
7ASM|1|A|G|2352
7ASM|1|A|U|2353
7ASM|1|A|A|2354
7ASM|1|A|A|2355
7ASM|1|A|A|2356
7ASM|1|A|G|2357
7ASM|1|A|G|2358

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27