HL_7ASM_066

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

AAAGAUGAU

Length

9 nucleotides

Bulged bases

7ASM|1|A|A|2840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASM_066 not in the Motif Atlas

Homologous match to HL_4WF9_064

Geometric discrepancy: 0.0994

The information below is about HL_4WF9_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7ASM|1|A|A|2839
7ASM|1|A|A|2840
7ASM|1|A|A|2841
7ASM|1|A|G|2842
7ASM|1|A|A|2843
7ASM|1|A|U|2844
7ASM|1|A|G|2845
7ASM|1|A|A|2846
7ASM|1|A|U|2847

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L17