HL_7ASP_028

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGAUAUGUUAGCAUAUCAG

Length

19 nucleotides

Bulged bases

7ASP|1|Y|U|174, 7ASP|1|Y|C|175

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASP_028 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1597

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

7ASP|1|Y|C|152
7ASP|1|Y|G|153
7ASP|1|Y|A|154
7ASP|1|Y|U|155
7ASP|1|Y|A|156
7ASP|1|Y|U|157
7ASP|1|Y|G|158
7ASP|1|Y|U|159
7ASP|1|Y|U|167
7ASP|1|Y|A|168
7ASP|1|Y|G|169
7ASP|1|Y|C|170
7ASP|1|Y|A|171
7ASP|1|Y|U|172
7ASP|1|Y|A|173
7ASP|1|Y|U|174
7ASP|1|Y|C|175
7ASP|1|Y|A|176
7ASP|1|Y|G|177

Current chains

Chain Y

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L28