HL_7ASP_040

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

AGUAAAU

Length

7 nucleotides

Bulged bases

7ASP|1|Y|A|660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASP_040 not in the Motif Atlas

Geometric match to HL_6UFG_005

Geometric discrepancy: 0.2945

The information below is about HL_6UFG_005

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

7ASP|1|Y|A|655
7ASP|1|Y|G|656
7ASP|1|Y|U|657
7ASP|1|Y|A|658
7ASP|1|Y|A|659
7ASP|1|Y|A|660
7ASP|1|Y|U|661

Current chains

Chain Y

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4