HL_7ASP_053

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASP_053 not in the Motif Atlas

Homologous match to HL_4WF9_032

Geometric discrepancy: 0.095

The information below is about HL_4WF9_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

7ASP|1|Y|G|1318
7ASP|1|Y|U|1319
7ASP|1|Y|G|1320
7ASP|1|Y|A|1321
7ASP|1|Y|G|1322
7ASP|1|Y|A|1323
7ASP|1|Y|A|1324
7ASP|1|Y|U|1325
7ASP|1|Y|C|1326

Current chains

Chain Y

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L17

Chain Q

50S ribosomal protein L22